CRM22_008628 protein (Opisthorchis felineus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CRM22_008628

Uncharacterized protein. (590 aa)

Predicted Functional Partners:

CRM22_003799

0.952

CRM22_006308

0.945

CRM22_007767

0.901

CRM22_011322

0.889

CRM22_000500

0.780

CRM22_006772

0.700

CRM22_000314

0.687

CRM22_011173

0.683

CRM22_009626

0.683

CRM22_009627

0.683

Your Current Organism:

Opisthorchis felineus

NCBI taxonomy Id: 147828
Other names: O. felineus, cat liver fluke

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRM22_000314	CRM22_003799	A0A4S2MFJ2	A0A4S2M5K0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.609
CRM22_000314	CRM22_006308	A0A4S2MFJ2	A0A4S2LLU1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.620
CRM22_000314	CRM22_007767	A0A4S2MFJ2	A0A4S2LEK1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.874
CRM22_000314	CRM22_008628	A0A4S2MFJ2	A0A4S2LAB9	Uncharacterized protein.	Uncharacterized protein.	0.687
CRM22_000314	CRM22_009626	A0A4S2MFJ2	A0A4S2L5Z1	Uncharacterized protein.	RING-type domain-containing protein.	0.457
CRM22_000314	CRM22_009627	A0A4S2MFJ2	A0A4S2L6J8	Uncharacterized protein.	Uncharacterized protein.	0.457
CRM22_000314	CRM22_011173	A0A4S2MFJ2	A0A4S2KA25	Uncharacterized protein.	Uncharacterized protein.	0.457
CRM22_000314	CRM22_011322	A0A4S2MFJ2	A0A4S2JQI3	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.670
CRM22_000500	CRM22_003799	A0A4S2MF22	A0A4S2M5K0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.722
CRM22_000500	CRM22_006308	A0A4S2MF22	A0A4S2LLU1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.925
CRM22_000500	CRM22_006772	A0A4S2MF22	A0A4S2LRP4	Uncharacterized protein.	Uncharacterized protein.	0.686
CRM22_000500	CRM22_008628	A0A4S2MF22	A0A4S2LAB9	Uncharacterized protein.	Uncharacterized protein.	0.780
CRM22_000500	CRM22_009626	A0A4S2MF22	A0A4S2L5Z1	Uncharacterized protein.	RING-type domain-containing protein.	0.756
CRM22_000500	CRM22_009627	A0A4S2MF22	A0A4S2L6J8	Uncharacterized protein.	Uncharacterized protein.	0.756
CRM22_000500	CRM22_011173	A0A4S2MF22	A0A4S2KA25	Uncharacterized protein.	Uncharacterized protein.	0.756
CRM22_003799	CRM22_000314	A0A4S2M5K0	A0A4S2MFJ2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.609
CRM22_003799	CRM22_000500	A0A4S2M5K0	A0A4S2MF22	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.722
CRM22_003799	CRM22_006308	A0A4S2M5K0	A0A4S2LLU1	Ubiquitin-like domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
CRM22_003799	CRM22_007767	A0A4S2M5K0	A0A4S2LEK1	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.940
CRM22_003799	CRM22_008628	A0A4S2M5K0	A0A4S2LAB9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.952