STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRM22_009313Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)    
Predicted Functional Partners:
CRM22_006769
Uncharacterized protein.
   
 0.999
CRM22_006508
CPSF_A domain-containing protein.
   
 0.999
CRM22_003739
RRM domain-containing protein.
   
 0.999
CRM22_001239
SF3b1 domain-containing protein.
    
 0.999
CRM22_000038
PSP domain-containing protein.
    
 0.999
CRM22_007127
Uncharacterized protein.
   
 0.999
CRM22_010623
Matrin-type domain-containing protein.
   
 0.996
CRM22_008741
Uncharacterized protein.
    
 0.995
CRM22_011327
Small nuclear ribonucleoprotein Sm D2.
   
 0.994
CRM22_005955
Matrin-type domain-containing protein.
   
 0.993
Your Current Organism:
Opisthorchis felineus
NCBI taxonomy Id: 147828
Other names: O. felineus, cat liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.