CRM22_000880 protein (Opisthorchis felineus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRM22_000880

Uncharacterized protein. (222 aa)

Predicted Functional Partners:

CRM22_009270

0.762

CRM22_006877

0.745

CRM22_003163

0.715

CRM22_011425

0.688

CRM22_009746

0.669

CRM22_010824

0.666

KATNAL2

0.661

CRM22_007080

0.660

CRM22_000119

0.660

CRM22_006325

0.640

Your Current Organism:

Opisthorchis felineus

NCBI taxonomy Id: 147828
Other names: O. felineus, cat liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRM22_000119	CRM22_000880	A0A4S2ML69	A0A4S2MD32	Uncharacterized protein.	Uncharacterized protein.	0.660
CRM22_000119	CRM22_003163	A0A4S2ML69	A0A4V3SG03	Uncharacterized protein.	Uncharacterized protein.	0.949
CRM22_000119	CRM22_006325	A0A4S2ML69	A0A4S2LSX5	Uncharacterized protein.	Uncharacterized protein.	0.981
CRM22_000119	CRM22_006877	A0A4S2ML69	A0A4S2LRE1	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.985
CRM22_000119	CRM22_007080	A0A4S2ML69	A0A4S2LQW9	Uncharacterized protein.	Uncharacterized protein.	0.990
CRM22_000119	CRM22_009270	A0A4S2ML69	A0A4S2L847	Uncharacterized protein.	Uncharacterized protein.	0.733
CRM22_000119	CRM22_009746	A0A4S2ML69	A0A4V3SCV0	Uncharacterized protein.	Uncharacterized protein.	0.991
CRM22_000119	CRM22_010824	A0A4S2ML69	A0A4S2KLT1	Uncharacterized protein.	Uncharacterized protein.	0.697
CRM22_000119	CRM22_011425	A0A4S2ML69	A0A4S2JBL0	Uncharacterized protein.	Uncharacterized protein.	0.986
CRM22_000119	KATNAL2	A0A4S2ML69	A0A4S2LNN2	Uncharacterized protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.452
CRM22_000880	CRM22_000119	A0A4S2MD32	A0A4S2ML69	Uncharacterized protein.	Uncharacterized protein.	0.660
CRM22_000880	CRM22_003163	A0A4S2MD32	A0A4V3SG03	Uncharacterized protein.	Uncharacterized protein.	0.715
CRM22_000880	CRM22_006325	A0A4S2MD32	A0A4S2LSX5	Uncharacterized protein.	Uncharacterized protein.	0.640
CRM22_000880	CRM22_006877	A0A4S2MD32	A0A4S2LRE1	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.745
CRM22_000880	CRM22_007080	A0A4S2MD32	A0A4S2LQW9	Uncharacterized protein.	Uncharacterized protein.	0.660
CRM22_000880	CRM22_009270	A0A4S2MD32	A0A4S2L847	Uncharacterized protein.	Uncharacterized protein.	0.762
CRM22_000880	CRM22_009746	A0A4S2MD32	A0A4V3SCV0	Uncharacterized protein.	Uncharacterized protein.	0.669
CRM22_000880	CRM22_010824	A0A4S2MD32	A0A4S2KLT1	Uncharacterized protein.	Uncharacterized protein.	0.666
CRM22_000880	CRM22_011425	A0A4S2MD32	A0A4S2JBL0	Uncharacterized protein.	Uncharacterized protein.	0.688
CRM22_000880	KATNAL2	A0A4S2MD32	A0A4S2LNN2	Uncharacterized protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.661