Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKP46904.1 | AKP46905.1 | BSM4216_1623 | BSM4216_1624 | Putative nucleic-acid-binding protein implicated in transcription termination; COG2740. | Ribosomal protein L7Ae family protein. | 0.977 |
AKP46904.1 | AKP46907.1 | BSM4216_1623 | BSM4216_1626 | Putative nucleic-acid-binding protein implicated in transcription termination; COG2740. | YlxP-like protein. | 0.803 |
AKP46904.1 | infB | BSM4216_1623 | BSM4216_1625 | Putative nucleic-acid-binding protein implicated in transcription termination; COG2740. | Translation initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.962 |
AKP46904.1 | nusA | BSM4216_1623 | BSM4216_1622 | Putative nucleic-acid-binding protein implicated in transcription termination; COG2740. | Transcription termination protein NusA; Participates in both transcription termination and antitermination. | 0.962 |
AKP46904.1 | rbfA | BSM4216_1623 | BSM4216_1627 | Putative nucleic-acid-binding protein implicated in transcription termination; COG2740. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.843 |
AKP46904.1 | rimP | BSM4216_1623 | BSM4216_1621 | Putative nucleic-acid-binding protein implicated in transcription termination; COG2740. | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.918 |
AKP46904.1 | truB | BSM4216_1623 | BSM4216_1628 | Putative nucleic-acid-binding protein implicated in transcription termination; COG2740. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.632 |
AKP46905.1 | AKP46904.1 | BSM4216_1624 | BSM4216_1623 | Ribosomal protein L7Ae family protein. | Putative nucleic-acid-binding protein implicated in transcription termination; COG2740. | 0.977 |
AKP46905.1 | AKP46907.1 | BSM4216_1624 | BSM4216_1626 | Ribosomal protein L7Ae family protein. | YlxP-like protein. | 0.833 |
AKP46905.1 | infB | BSM4216_1624 | BSM4216_1625 | Ribosomal protein L7Ae family protein. | Translation initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.988 |
AKP46905.1 | nusA | BSM4216_1624 | BSM4216_1622 | Ribosomal protein L7Ae family protein. | Transcription termination protein NusA; Participates in both transcription termination and antitermination. | 0.966 |
AKP46905.1 | rbfA | BSM4216_1624 | BSM4216_1627 | Ribosomal protein L7Ae family protein. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.751 |
AKP46905.1 | rimP | BSM4216_1624 | BSM4216_1621 | Ribosomal protein L7Ae family protein. | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.911 |
AKP46905.1 | truB | BSM4216_1624 | BSM4216_1628 | Ribosomal protein L7Ae family protein. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.965 |
AKP46907.1 | AKP46904.1 | BSM4216_1626 | BSM4216_1623 | YlxP-like protein. | Putative nucleic-acid-binding protein implicated in transcription termination; COG2740. | 0.803 |
AKP46907.1 | AKP46905.1 | BSM4216_1626 | BSM4216_1624 | YlxP-like protein. | Ribosomal protein L7Ae family protein. | 0.833 |
AKP46907.1 | infB | BSM4216_1626 | BSM4216_1625 | YlxP-like protein. | Translation initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.891 |
AKP46907.1 | nusA | BSM4216_1626 | BSM4216_1622 | YlxP-like protein. | Transcription termination protein NusA; Participates in both transcription termination and antitermination. | 0.800 |
AKP46907.1 | rbfA | BSM4216_1626 | BSM4216_1627 | YlxP-like protein. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.888 |
AKP46907.1 | rimP | BSM4216_1626 | BSM4216_1621 | YlxP-like protein. | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.551 |
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