STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKP47227.1Cytochrome c-type biogenesis protein CcdA. (235 aa)    
Predicted Functional Partners:
AKP47644.1
Cytochrome c-type biogenesis protein ResA.
  
 0.965
AKP47202.1
Cytochrome c-type biogenesis protein CcmG/DsbEthiol:disulfide oxidoreductase.
  
 0.801
AKP47642.1
Cytochrome c-type biogenesis protein CcsA/ResC.
 
  
 0.667
AKP47643.1
Cytochrome c-type biogenesis protein Ccs1/ResB.
 
  
 0.658
AKP48007.1
HemX proteinnegative effector of steady-state concentration of glutamyl-tRNA reductase.
 
  
 0.651
AKP46741.1
Hypothetical protein.
   
    0.567
msrB
Peptide methionine sulfoxide reductase MsrB.
  
  
 0.473
msrA-2
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.473
AKP47236.1
Site-specific recombinaseresolvase family.
  
    0.472
AKP47228.1
Aromatic hydrocarbon utilization transcriptional regulator CatR; Belongs to the LysR transcriptional regulatory family.
  
    0.456
Your Current Organism:
Bacillus smithii
NCBI taxonomy Id: 1479
Other names: B. smithii, CCUG 27413, CIP 103790, DSM 4216, IFO 15311, JCM 9076, LMG 12526, LMG:12526, NBRC 15311, NRRL NRS-173
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