STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKP48149.1General stress protein. (159 aa)    
Predicted Functional Partners:
AKP48150.1
General stress protein.
  
    0.918
AKP48148.1
General stress protein.
  
    0.843
AKP45828.1
ComF operon protein ADNA transporter ATPase.
  
     0.695
AKP47570.1
Hypothetical protein; Belongs to the UPF0302 family.
  
  
 0.682
AKP48497.1
Hypothetical protein.
  
    0.625
AKP46743.1
Putative Cytosolic Protein.
  
    0.611
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
    0.532
AKP47899.1
Hypothetical protein.
  
     0.531
AKP47378.1
acetyltransferaseGNAT family.
   
    0.477
rsbW
Serine-protein kinase rsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
  
    0.472
Your Current Organism:
Bacillus smithii
NCBI taxonomy Id: 1479
Other names: B. smithii, CCUG 27413, CIP 103790, DSM 4216, IFO 15311, JCM 9076, LMG 12526, LMG:12526, NBRC 15311, NRRL NRS-173
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.