Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HLUCCA13_05480 | HLUCCA13_05485 | GCA_000686925_02877 | GCA_000686925_02876 | Unannotated protein. | Unannotated protein. | 0.956 |
HLUCCA13_05480 | HLUCCA13_05490 | GCA_000686925_02877 | GCA_000686925_02875 | Unannotated protein. | Unannotated protein. | 0.916 |
HLUCCA13_05480 | HLUCCA13_06640 | GCA_000686925_02877 | GCA_000686925_02750 | Unannotated protein. | Unannotated protein. | 0.798 |
HLUCCA13_05480 | HLUCCA13_06885 | GCA_000686925_02877 | GCA_000686925_02799 | Unannotated protein. | Unannotated protein. | 0.643 |
HLUCCA13_05480 | ksgA | GCA_000686925_02877 | GCA_000686925_01610 | Unannotated protein. | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.625 |
HLUCCA13_05480 | lapE | GCA_000686925_02877 | GCA_000686925_03434 | Unannotated protein. | Unannotated protein. | 0.798 |
HLUCCA13_05480 | lolA | GCA_000686925_02877 | GCA_000686925_00071 | Unannotated protein. | Unannotated protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.911 |
HLUCCA13_05480 | lolC | GCA_000686925_02877 | GCA_000686925_00361 | Unannotated protein. | Unannotated protein. | 0.984 |
HLUCCA13_05480 | rpsK | GCA_000686925_02877 | GCA_000686925_02679 | Unannotated protein. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.657 |
HLUCCA13_05480 | tsaD | GCA_000686925_02877 | GCA_000686925_01602 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.590 |
HLUCCA13_05485 | HLUCCA13_05480 | GCA_000686925_02876 | GCA_000686925_02877 | Unannotated protein. | Unannotated protein. | 0.956 |
HLUCCA13_05485 | HLUCCA13_05490 | GCA_000686925_02876 | GCA_000686925_02875 | Unannotated protein. | Unannotated protein. | 0.986 |
HLUCCA13_05490 | HLUCCA13_05480 | GCA_000686925_02875 | GCA_000686925_02877 | Unannotated protein. | Unannotated protein. | 0.916 |
HLUCCA13_05490 | HLUCCA13_05485 | GCA_000686925_02875 | GCA_000686925_02876 | Unannotated protein. | Unannotated protein. | 0.986 |
HLUCCA13_06640 | HLUCCA13_05480 | GCA_000686925_02750 | GCA_000686925_02877 | Unannotated protein. | Unannotated protein. | 0.798 |
HLUCCA13_06640 | lolC | GCA_000686925_02750 | GCA_000686925_00361 | Unannotated protein. | Unannotated protein. | 0.875 |
HLUCCA13_06885 | HLUCCA13_05480 | GCA_000686925_02799 | GCA_000686925_02877 | Unannotated protein. | Unannotated protein. | 0.643 |
ksgA | HLUCCA13_05480 | GCA_000686925_01610 | GCA_000686925_02877 | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Unannotated protein. | 0.625 |
ksgA | rpsK | GCA_000686925_01610 | GCA_000686925_02679 | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.957 |
ksgA | tsaD | GCA_000686925_01610 | GCA_000686925_01602 | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.663 |
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