STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HLUCCA13_08360Unannotated protein. (390 aa)    
Predicted Functional Partners:
HLUCCA13_02885
Unannotated protein; Belongs to the aldehyde dehydrogenase family.
   
  0.910
HLUCCA13_08355
Unannotated protein.
       0.821
HLUCCA13_08365
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
 
     0.791
HLUCCA13_03605
Unannotated protein.
  
 
 0.583
ybaZ
Unannotated protein.
       0.546
ybgC
Unannotated protein.
 
     0.508
HLUCCA13_03610
Unannotated protein.
  
 
  0.506
thiY
Unannotated protein.
  
 
  0.506
HLUCCA13_05300
Unannotated protein.
  
     0.501
lcdH
Unannotated protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
   
 0.500
Your Current Organism:
Halomonas sp. HL48
NCBI taxonomy Id: 1479235
Other names: H. sp. HL-48, Halomonas sp. HL-48
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