STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HLUCCO03_04535Unannotated protein. (562 aa)    
Predicted Functional Partners:
HLUCCO03_11715
Unannotated protein.
    
 
 0.938
fadN-2
Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.807
fadN
Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.807
fadJ
Unannotated protein.
  
 0.807
fadB
Unannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 0.807
acpP
Unannotated protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.807
rplF
Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.803
HLUCCO03_17895
Unannotated protein; Belongs to the cytochrome P450 family.
   
 0.794
pta
Unannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.700
rplM
Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
 
 0.668
Your Current Organism:
Marinobacter sp. HL58
NCBI taxonomy Id: 1479237
Other names: M. sp. HL-58, Marinobacter sp. HL-58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.