STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liuEUnannotated protein. (302 aa)    
Predicted Functional Partners:
liuC
Unannotated protein.
 
 0.999
atuE
Unannotated protein.
 
 
 0.991
liuB
Unannotated protein.
 
 0.975
atoB-4
Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.974
atoB-3
Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.970
fadA
Unannotated protein; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
  
 
 0.970
atoB-6
Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.970
GCA_000686085_03254
Unannotated protein.
  
 
 0.970
atoB
Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.970
sucC
Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
   
 0.969
Your Current Organism:
Marinobacter sp. HL58
NCBI taxonomy Id: 1479237
Other names: M. sp. HL-58, Marinobacter sp. HL-58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.