STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APE30584.1Ectoine hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)    
Predicted Functional Partners:
APE32238.1
L-ectoine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.909
APE32239.1
Diaminobutyrate--2-oxoglutarate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.763
APE32240.1
Diaminobutyrate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
APE30272.1
Serine--glyoxylate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.578
APE31625.1
Class V aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.578
APE30583.1
Isomerase/hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.572
APE32464.1
Ectoine hydrolase DoeA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.510
APE31374.1
Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.500
APE30212.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.475
APE29656.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.407
Your Current Organism:
Halolamina sediminis
NCBI taxonomy Id: 1480675
Other names: CECT 8739, H. sediminis, Halolamina sediminis Koh et al. 2015, Halolamina sp. halo-7, JCM 30187, strain halo-7, strain halo7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.