STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyRibonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (509 aa)    
Predicted Functional Partners:
DC28_13800
Hypothetical protein; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
   
  0.871
DC28_02385
Hypothetical protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.737
motB
Flagellar motor protein MotB; With MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.590
DC28_03950
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.590
DC28_08500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.590
kbl
2-amino-3-ketobutyrate CoA ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
       0.566
DC28_07010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.550
DC28_07575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.545
pnp
Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.531
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.499
Your Current Organism:
Spirochaeta lutea
NCBI taxonomy Id: 1480694
Other names: DSM 29074, KCTC 15387, S. lutea, Spirochaeta lutea Shivani et al. 2015, Spirochaeta sp. JC230, strain JC230
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.