STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAM75897.1Alpha-mannosidase. (717 aa)    
Predicted Functional Partners:
GAM75896.1
Alpha-mannosidase.
     0.994
GAM75894.1
PTS system.
 
 
  0.883
GAM75895.1
PTS system.
 
 
  0.880
GAM75893.1
PTS system.
 
 
  0.875
GAM75119.1
Glycosyl hydrolase.
 
     0.828
GAM75126.1
PTS system.
 
 
  0.780
GAM75118.1
PTS system nitrogen-specific IIA component.
 
 
  0.732
GAM75125.1
PTS system HrsA EIIA component.
  
 
  0.689
GAM75956.1
PTS system.
  
 
  0.689
GAM74976.1
PTS system.
  
 
  0.640
Your Current Organism:
Vibrio ishigakensis
NCBI taxonomy Id: 1481914
Other names: JCM 19231, LMG 28703, LMG:28703, V. ishigakensis, Vibrio ishigakensis Gao et al. 2018, Vibrio sp. C1(2016), Vibrio sp. C212, Vibrio sp. C216, Vibrio sp. C5(2016), Vibrio sp. C64, Vibrio sp. JCM 19231, Vibrio sp. JCM 19232, Vibrio sp. JCM 19241, strain c1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.