STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAM75957.1T1SS associated transglutaminase. (141 aa)    
Predicted Functional Partners:
GAM75580.1
Agglutination protein.
 
   
 0.806
GAM74482.1
Type I secretion system.
 
  
 0.804
GAM74484.1
ABC transporter.
 
  
 0.791
GAM74483.1
Type I secretion system ATPase.
 
  
 0.783
GAM77455.1
MSHA biogenesis protein mshH.
 
 
 
 0.767
GAM77456.1
MSHA biogenesis protein mshH.
 
 
 
 0.710
GAM73767.1
Lipid A export ATP-binding/permease protein msbA.
 
  
 0.664
GAM77323.1
Hypothetical protein.
  
 
 0.658
GAM77324.1
GGDEF family protein.
  
 
 0.658
GAM77325.1
Diguanylate cyclase.
  
 
 0.658
Your Current Organism:
Vibrio ishigakensis
NCBI taxonomy Id: 1481914
Other names: JCM 19231, LMG 28703, LMG:28703, V. ishigakensis, Vibrio ishigakensis Gao et al. 2018, Vibrio sp. C1(2016), Vibrio sp. C212, Vibrio sp. C216, Vibrio sp. C5(2016), Vibrio sp. C64, Vibrio sp. JCM 19231, Vibrio sp. JCM 19232, Vibrio sp. JCM 19241, strain c1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.