STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAM75418.1NAD-dependent malic enzyme. (323 aa)    
Predicted Functional Partners:
GAM75419.1
NAD-dependent malic enzyme; Belongs to the malic enzymes family.
     0.991
GAM76895.1
Pyeuvate kinase; Belongs to the pyruvate kinase family.
  
 0.819
GAM75484.1
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.784
GAM75485.1
Fumarate hydratase class I.
  
 
 0.784
pckA
Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.
  
 
 0.768
GAM72747.1
Oxaloacetate decarboxylase alpha chain.
    
 0.738
GAM72748.1
Oxaloacetate decarboxylase alpha chain.
    
 0.738
GAM72749.1
Oxaloacetate decarboxylase alpha chain.
    
 0.738
GAM76846.1
Malate dehydrogenase.
  
 0.735
GAM76847.1
Malate dehydrogenase.
  
 0.735
Your Current Organism:
Vibrio ishigakensis
NCBI taxonomy Id: 1481914
Other names: JCM 19231, LMG 28703, LMG:28703, V. ishigakensis, Vibrio ishigakensis Gao et al. 2018, Vibrio sp. C1(2016), Vibrio sp. C212, Vibrio sp. C216, Vibrio sp. C5(2016), Vibrio sp. C64, Vibrio sp. JCM 19231, Vibrio sp. JCM 19232, Vibrio sp. JCM 19241, strain c1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.