Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GAM74178.1 | GAM76419.1 | JCM19241_5374 | JCM19241_3956 | Hypothetical protein. | Naphthoate synthase. | 0.843 |
GAM74178.1 | GAM76420.1 | JCM19241_5374 | JCM19241_3957 | Hypothetical protein. | Naphthoate synthase. | 0.840 |
GAM74178.1 | GAM76421.1 | JCM19241_5374 | JCM19241_3958 | Hypothetical protein. | Naphthoate synthase. | 0.693 |
GAM74178.1 | GAM77802.1 | JCM19241_5374 | JCM19241_4466 | Hypothetical protein. | O-succinylbenzoic acid-CoA ligase. | 0.647 |
GAM74178.1 | GAM77807.1 | JCM19241_5374 | JCM19241_4471 | Hypothetical protein. | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase. | 0.566 |
GAM74178.1 | GAM77810.1 | JCM19241_5374 | JCM19241_4474 | Hypothetical protein. | Menaquinone-specific isochorismate synthase. | 0.514 |
GAM74178.1 | menA | JCM19241_5374 | JCM19241_6065 | Hypothetical protein. | 1,4-dihydroxy-2-naphthoate polyprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.810 |
GAM74178.1 | menD | JCM19241_5374 | JCM19241_4472 | Hypothetical protein. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.650 |
GAM76419.1 | GAM74178.1 | JCM19241_3956 | JCM19241_5374 | Naphthoate synthase. | Hypothetical protein. | 0.843 |
GAM76419.1 | GAM76420.1 | JCM19241_3956 | JCM19241_3957 | Naphthoate synthase. | Naphthoate synthase. | 0.994 |
GAM76419.1 | GAM76421.1 | JCM19241_3956 | JCM19241_3958 | Naphthoate synthase. | Naphthoate synthase. | 0.887 |
GAM76419.1 | GAM77802.1 | JCM19241_3956 | JCM19241_4466 | Naphthoate synthase. | O-succinylbenzoic acid-CoA ligase. | 0.900 |
GAM76419.1 | GAM77805.1 | JCM19241_3956 | JCM19241_4469 | Naphthoate synthase. | O-succinylbenzoate synthase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.834 |
GAM76419.1 | GAM77806.1 | JCM19241_3956 | JCM19241_4470 | Naphthoate synthase. | O-succinylbenzoate synthase. | 0.766 |
GAM76419.1 | GAM77807.1 | JCM19241_3956 | JCM19241_4471 | Naphthoate synthase. | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase. | 0.774 |
GAM76419.1 | GAM77810.1 | JCM19241_3956 | JCM19241_4474 | Naphthoate synthase. | Menaquinone-specific isochorismate synthase. | 0.730 |
GAM76419.1 | menA | JCM19241_3956 | JCM19241_6065 | Naphthoate synthase. | 1,4-dihydroxy-2-naphthoate polyprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.815 |
GAM76419.1 | menD | JCM19241_3956 | JCM19241_4472 | Naphthoate synthase. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.883 |
GAM76420.1 | GAM74178.1 | JCM19241_3957 | JCM19241_5374 | Naphthoate synthase. | Hypothetical protein. | 0.840 |
GAM76420.1 | GAM76419.1 | JCM19241_3957 | JCM19241_3956 | Naphthoate synthase. | Naphthoate synthase. | 0.994 |
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