Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC47579.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (378 aa)    
Predicted Functional Partners:
APC47578.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.955
APC47577.1
Spore germination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.941
APC50156.1
Spore germination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.637
APC47391.1
Spore gernimation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.612
APC50185.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
APC47392.1
Spore germination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.563
APC47967.1
Spore germination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.530
APC47144.1
Spore gernimation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.478
APC50086.1
Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.464
APC47580.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.446
Your Current Organism:
Virgibacillus halodenitrificans
NCBI taxonomy Id: 1482
Other names: ATCC 49067, Bacillus halodenitrificans, DSM 10037, JCM 12304, LMG 9818, LMG:9818, NBRC 102361, V. halodenitrificans
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