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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC48010.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (204 aa)    
Predicted Functional Partners:
APC48011.1
Sporulation protein YtfJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.953
APC46696.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
APC48155.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.715
APC46764.1
Spore cortex biosynthesis protein YabQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
APC48246.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
APC48120.1
Stage VI sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.681
APC48331.1
Stage III sporulation protein AF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
APC48223.1
Sporulation protein YqfC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.671
APC48313.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
APC46767.1
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.661
Your Current Organism:
Virgibacillus halodenitrificans
NCBI taxonomy Id: 1482
Other names: ATCC 49067, Bacillus halodenitrificans, DSM 10037, JCM 12304, LMG 9818, LMG:9818, NBRC 102361, V. halodenitrificans
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