Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC48138.1Stage IV sporulation protein FA; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)    
Predicted Functional Partners:
APC50218.1
Stage IV sporulation protein FB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.955
APC46726.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.890
APC48333.1
Stage III sporulation protein AH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.837
APC48155.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.807
APC48120.1
Stage VI sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.806
APC46768.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.795
APC48208.1
Stage II sporulation protein P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.794
APC48331.1
Stage III sporulation protein AF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.790
APC48127.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.773
APC48323.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
Your Current Organism:
Virgibacillus halodenitrificans
NCBI taxonomy Id: 1482
Other names: ATCC 49067, Bacillus halodenitrificans, DSM 10037, JCM 12304, LMG 9818, LMG:9818, NBRC 102361, V. halodenitrificans
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.