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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC49155.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)    
Predicted Functional Partners:
APC49156.1
Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.899
APC49158.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.871
APC48622.1
Flagellar motor switch phosphatase FliY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.868
APC49159.1
Cell division protein FtsN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.848
APC50145.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.791
APC49525.1
Amyloid fiber anchoring/assembly protein TapA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.779
APC49526.1
Cell division protein FtsN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.777
APC49530.1
Cell division protein FtsN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.776
APC47174.1
Lipoprotein YerB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.771
APC48426.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
Your Current Organism:
Virgibacillus halodenitrificans
NCBI taxonomy Id: 1482
Other names: ATCC 49067, Bacillus halodenitrificans, DSM 10037, JCM 12304, LMG 9818, LMG:9818, NBRC 102361, V. halodenitrificans
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