Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
OAR05111.1Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)    
Predicted Functional Partners:
OAR05454.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.746
OAR05505.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.746
OAR04583.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.719
OAR04642.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.719
OAR04969.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.494
OAR05110.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
       0.486
OAR05137.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.483
OAR04929.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.463
Your Current Organism:
Hydrogenibacillus schlegelii
NCBI taxonomy Id: 1484
Other names: ATCC 43741, Bacillus schlegelii, CCUG 26017, CIP 106933, DSM 2000, H. schlegelii, LMG 7133, LMG:7133, strain MA 48
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