STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW44026.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)    
Predicted Functional Partners:
APW44023.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.939
APW44025.1
N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.713
APW44024.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.617
APW44022.1
Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.491
APW44027.1
DUF3309 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.422
Your Current Organism:
Rhodoferax saidenbachensis
NCBI taxonomy Id: 1484693
Other names: CCUG 57711, DSM 22694, R. saidenbachensis, Rhodoferax saidenbachensis Kaden et al. 2014, strain ED16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.