STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE43696.1Hypothetical protein. (317 aa)    
Predicted Functional Partners:
SHE43732.1
Protein of unknown function.
 
     0.940
SHE43817.1
Lactoylglutathione lyase.
       0.746
SHF14173.1
Surface polysaccharide O-acyltransferase, integral membrane enzyme.
  
     0.739
SHE49477.1
Protein of unknown function.
  
     0.726
SHE43772.1
Uncharacterized membrane protein YoaT, DUF817 family.
       0.700
SHE92279.1
Protein of unknown function.
  
     0.698
SHE32152.1
NTE family protein.
  
     0.697
SHE93005.1
Hypothetical protein.
  
     0.683
SHF14032.1
Methyltransferase, FkbM family.
  
     0.679
SHE72798.1
Ca2+-binding protein, RTX toxin-related.
  
     0.667
Your Current Organism:
Litoreibacter ascidiaceicola
NCBI taxonomy Id: 1486859
Other names: CECT 8539, DSM 100566, KCTC 42050, L. ascidiaceicola, Litoreibacter ascidiaceicola Kim et al. 2014, Litoreibacter sp. RSS4-C1, strain RSS4-C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.