STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF23206.1Membrane protein TerC, possibly involved in tellurium resistance. (274 aa)    
Predicted Functional Partners:
SHF23143.1
Uncharacterized conserved protein YaaN involved in tellurite resistance; Belongs to the TelA family.
  
    0.655
SHF23237.1
23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.
       0.614
SHF23175.1
5-bromo-4-chloroindolyl phosphate hydrolysis protein.
       0.580
SHF23114.1
Protein of unknown function.
       0.530
SHF23079.1
Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain.
       0.453
tadA
tRNA(Arg) A34 adenosine deaminase TadA; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.419
Your Current Organism:
Litoreibacter ascidiaceicola
NCBI taxonomy Id: 1486859
Other names: CECT 8539, DSM 100566, KCTC 42050, L. ascidiaceicola, Litoreibacter ascidiaceicola Kim et al. 2014, Litoreibacter sp. RSS4-C1, strain RSS4-C1
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