STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CbC4_1855Ribosomal protein L27. (96 aa)    
Predicted Functional Partners:
CbC4_1857
Ribosomal protein L21.
 
 0.999
CbC4_0258
Ribosomal protein L17.
  
 
 0.994
rpsI
Ribosomal protein S9.
 
 
 0.994
CbC4_1856
Conserved hypothetical protein.
  
 
 0.994
rplM
Ribosomal protein L13.
 
 
 0.993
CbC4_1439
Ribosomal protein S15.
 
 
 0.993
rpsB
Ribosomal protein S2.
  
 
 0.993
CbC4_1465
Ribosomal protein L19.
 
 
 0.993
CbC4_0018
Ribosomal protein S18.
 
 
 0.992
rplK
Ribosomal protein L11.
  
 
 0.992
Your Current Organism:
Clostridium botulinum BKT015925
NCBI taxonomy Id: 929506
Other names: C. botulinum BKT015925, Clostridium botulinum str. BKT015925, Clostridium botulinum strain BKT015925
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.