STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP91420.1Nitrogen fixation protein NifD; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)    
Predicted Functional Partners:
ALP91419.1
Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.829
ALR90454.1
Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.
 
    0.804
ALP91414.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.795
ALR90833.1
Nitrogenase molybdenum-iron protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifD/NifK/NifE/NifN family.
 
 
 0.775
nifE
Nitrogen fixation protein NifE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifD/NifK/NifE/NifN family.
 
 
 0.774
nifD
Nitrogenase molybdenum-iron protein alpha chain; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.744
ALR90457.1
Nitrogen fixation protein NifN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.723
amt
Ammonia permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.703
ALP89762.1
Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.703
ALP91596.1
Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.703
Your Current Organism:
Clostridium butyricum
NCBI taxonomy Id: 1492
Other names: ATCC 19398, Amylobacter navicula, Bacillus amylobacter, Bacillus butyricus, Bacillus navicula, Bacterium navicula, C. butyricum, CCUG 4217, CIP 103309, Clostridium kainantoi, Clostridium naviculum, Clostridium pseudotetanicum, DSM 10702, HAMBI 482, IAM 14194, IFO 13949, Metallacter amylobacter, NBRC 13949, NCCB 89156, NCIB 7423, NCIMB 7423, NCTC 7423, VPI 3266
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