Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfgFCyclic di-GMP phosphodiesterase YfgF. (350 aa)    
Predicted Functional Partners:
ycdT
Putative diguanylate cyclase YcdT.
 
 0.975
luxQ-2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 0.949
yeaP
Putative diguanylate cyclase YeaP.
 
 0.928
yedQ
Cellulose synthesis regulatory protein.
 
 0.917
ydaM
Putative protein.
 
 0.910
cph2
Phytochrome-like protein cph2.
 
0.905
yhcK
Putative protein.
 
 
 0.876
pleD
Response regulator PleD.
 
 0.839
AQ1_00830
Putative protein.
 
0.826
luxQ-3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.787
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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