Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQ1_00384Putative TRAP transporter large permease protein. (520 aa)    
Predicted Functional Partners:
AQ1_00383
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
 0.976
all3028
Monocarboxylate 2-oxoacid-binding periplasmic protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.962
siaP
Sialic acid-binding periplasmic protein SiaP.
 
   
 0.769
yiaO
2,3-diketo-L-gulonate-binding periplasmic protein YiaO.
 
   
 0.699
AQ1_01066
Putative TRAP transporter small permease protein.
 
  
  0.686
AQ1_01735
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
 0.674
AQ1_01736
Putative TRAP transporter large permease protein.
  
  
 
0.551
AQ1_02192
Putative TRAP transporter large permease protein.
  
  
 
0.551
siaT
Sialic acid TRAP transporter permease protein SiaT.
  
  
 
0.550
AQ1_00385
Hypothetical protein.
       0.501
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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