fyuA protein (alpha proteobacterium Q1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fyuA

Pesticin receptor. (775 aa)

Predicted Functional Partners:

GDI2185

0.852

tonB

0.787

cirA-4

0.785

irgA

0.772

btuB-3

0.758

btuB-7

0.757

pupA

0.751

tonB-3

0.738

cirA

0.736

fecR-3

0.686

Your Current Organism:

alpha proteobacterium Q1

NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GDI2185	fyuA	AQ1_02137	AQ1_00429	Outer membrane protein.	Pesticin receptor.	0.852
GDI2185	pupA	AQ1_02137	AQ1_00171	Outer membrane protein.	Ferric-pseudobactin 358 receptor.	0.845
GDI2185	tonB	AQ1_02137	AQ1_01344	Outer membrane protein.	Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.698
GDI2185	tonB-3	AQ1_02137	AQ1_02495	Outer membrane protein.	Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.698
btuB-3	fyuA	AQ1_00897	AQ1_00429	Vitamin B12 transporter BtuB.	Pesticin receptor.	0.758
btuB-3	tonB	AQ1_00897	AQ1_01344	Vitamin B12 transporter BtuB.	Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.701
btuB-3	tonB-3	AQ1_00897	AQ1_02495	Vitamin B12 transporter BtuB.	Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.634
btuB-7	fyuA	AQ1_02092	AQ1_00429	Vitamin B12 transporter BtuB.	Pesticin receptor.	0.757
btuB-7	tonB	AQ1_02092	AQ1_01344	Vitamin B12 transporter BtuB.	Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.629
btuB-7	tonB-3	AQ1_02092	AQ1_02495	Vitamin B12 transporter BtuB.	Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.560
cirA	fyuA	AQ1_00543	AQ1_00429	Colicin I receptor.	Pesticin receptor.	0.736
cirA	tonB	AQ1_00543	AQ1_01344	Colicin I receptor.	Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.585
cirA	tonB-3	AQ1_00543	AQ1_02495	Colicin I receptor.	Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.550
cirA-4	fyuA	AQ1_02196	AQ1_00429	Colicin I receptor.	Pesticin receptor.	0.785
cirA-4	tonB	AQ1_02196	AQ1_01344	Colicin I receptor.	Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.735
cirA-4	tonB-3	AQ1_02196	AQ1_02495	Colicin I receptor.	Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.642
fecR-3	fyuA	AQ1_01701	AQ1_00429	Protein FecR.	Pesticin receptor.	0.686
fyuA	GDI2185	AQ1_00429	AQ1_02137	Pesticin receptor.	Outer membrane protein.	0.852
fyuA	btuB-3	AQ1_00429	AQ1_00897	Pesticin receptor.	Vitamin B12 transporter BtuB.	0.758
fyuA	btuB-7	AQ1_00429	AQ1_02092	Pesticin receptor.	Vitamin B12 transporter BtuB.	0.757