Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
irgA-2Iron-regulated outer membrane virulence protein. (969 aa)    
Predicted Functional Partners:
fyuA-3
Pesticin receptor.
  
  
  0.774
fyuA-6
Pesticin receptor.
  
  
  0.773
tonB
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
  0.736
AQ1_01028
Hypothetical protein.
  
     0.735
fyuA-2
Pesticin receptor.
  
  
  0.722
fyuA-5
Pesticin receptor.
  
  
  0.709
oar
Protein oar.
  
     0.702
fpvA
Ferripyoverdine receptor.
  
  
  0.695
AQ1_02094
Hypothetical protein.
  
     0.673
cirA-2
Colicin I receptor.
  
     0.671
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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