Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_00542tonB-dependent heme/hemoglobin receptor family protein. (487 aa)    
Predicted Functional Partners:
cirA
Colicin I receptor.
  
  0.988
GDI2185
Outer membrane protein.
     
 0.845
fyuA-6
Pesticin receptor.
  
  
  0.767
cirA-4
Colicin I receptor.
  
  
  0.765
fyuA-3
Pesticin receptor.
  
  
  0.761
fyuA-2
Pesticin receptor.
  
  
  0.737
fepA
Ferrienterobactin receptor.
  
  
  0.720
cirA-6
Colicin I receptor.
  
  
  0.710
AQ1_02820
Putative outer-membrane protein y4mB.
  
  
  0.706
Naaladl1
N-acetylated-alpha-linked acidic dipeptidase-like protein.
  
     0.702
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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