Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_00593Putative peptide ABC transporter periplasmic-binding protein y4tO. (537 aa)    
Predicted Functional Partners:
AQ1_00596
Putative peptide ABC transporter permease protein y4tQ.
 
 0.996
AQ1_00597
Putative peptide ABC transporter permease protein y4tP.
 
 0.996
AQ1_00595
Putative peptide ABC transporter ATP-binding protein y4tR; Belongs to the ABC transporter superfamily.
 
 0.960
appF
Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
 
 0.957
AQ1_00587
Putative ABC transporter ATP-binding protein.
    
  0.873
cysA
Sulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
   
 
  0.871
opuCB
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
     
 0.871
fbpC2
Fe(3+) ions import ATP-binding protein FbpC 2; Belongs to the ABC transporter superfamily.
    
  0.867
yadH
Inner membrane transport permease YadH.
     
 0.858
lptG
Lipopolysaccharide export system permease protein LptG.
     
  0.852
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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