Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_00827Putative ABC transporter-binding protein. (153 aa)    
Predicted Functional Partners:
mlaC
Putative phospholipid-binding protein MlaC.
 
 0.996
AQ1_00664
Putative ABC transporter permease protein.
 
 0.990
mkl
Putative ribonucleotide transport ATP-binding protein mkl.
 
 0.987
AQ1_01570
Putative ABC transporter permease protein.
 
 0.973
mkl-2
Putative ribonucleotide transport ATP-binding protein mkl.
  
 0.957
AQ1_02602
Putative lipoprotein.
 
   
 0.858
AQ1_01567
ABC-type uncharacterized transport system, auxiliary component.
  
  0.827
AQ1_00826
Putative protein.
       0.775
ndufa12
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12.
       0.608
bll6063
Putative protein.
     
  0.601
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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