Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AQ1_00831Ribonucleases G and E. (259 aa)    
Predicted Functional Partners:
AQ1_01330
Preprotein translocase subunit SecG.
  
    0.670
NMT1
Phosphoethanolamine N-methyltransferase 1.
  
     0.627
AQ1_00863
Polysaccharide biosynthesis protein.
  
     0.593
AQ1_01827
Type I secretion outer membrane protein, TolC family.
  
     0.531
AQ1_02817
Hypothetical protein.
  
     0.531
AQ1_00694
Chromosome segregation protein SMC.
  
     0.521
AQ1_00830
Putative protein.
       0.506
AQ1_00969
Hypothetical protein.
  
     0.490
AQ1_00695
Hpt domain protein.
  
     0.476
flaEY
Regulatory protein FlaEY.
  
     0.459
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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