Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_00865Lipopolysaccharide ABC transporter permease LptF. (434 aa)    
Predicted Functional Partners:
lptG
Lipopolysaccharide export system permease protein LptG.
 
 0.999
AQ1_00587
Putative ABC transporter ATP-binding protein.
 
 
 0.990
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
 
 0.906
AQ1_00863
Polysaccharide biosynthesis protein.
 
     0.858
opuCB
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
     
  0.852
AQ1_01570
Putative ABC transporter permease protein.
  
  
 0.838
yghO
Putative uncharacterized protein YghO; Fragment.
 
     0.831
fbpC2
Fe(3+) ions import ATP-binding protein FbpC 2; Belongs to the ABC transporter superfamily.
     
  0.818
yadH
Inner membrane transport permease YadH.
     
  0.818
AQ1_00593
Putative peptide ABC transporter periplasmic-binding protein y4tO.
     
  0.818
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
Server load: medium (42%) [HD]