Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQ1_00929Putative zinc metalloprotease. (487 aa)    
Predicted Functional Partners:
AQ1_00537
Hypothetical protein.
  
     0.701
AQ1_02608
Zinc carboxypeptidase.
  
     0.696
AQ1_00536
Zinc carboxypeptidase.
  
     0.695
ENPEP
Glutamyl aminopeptidase.
  
 
   0.600
sfsA
Sugar fermentation stimulation protein homolog; Belongs to the SfsA family.
       0.596
TTHA0252
Ribonuclease.
   
  0.592
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
  0.582
AQ1_00742
Hypothetical protein.
  
     0.568
tolB-2
Protein TolB.
 
     0.553
ENDO4
Endonuclease 4.
  
     0.534
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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