Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hmuV-2Hemin import ATP-binding protein HmuV. (253 aa)    
Predicted Functional Partners:
yvrB
Putative ABC transporter permease protein YvrB; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.998
AQ1_00990
Corrinoid ABC transporter substrate-binding protein.
 
 0.997
hmuU
Hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.994
AQ1_02797
Vitamin B12-transporter protein BtuF.
  
 0.969
btuB-4
Vitamin B12 transporter BtuB.
 
     0.871
opuCB
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
     
 0.869
hmuT
Hemin-binding periplasmic protein HmuT.
 
 
 0.858
AQ1_00587
Putative ABC transporter ATP-binding protein.
     
  0.802
hmuS
Hemin transport protein HmuS.
   
 0.789
AQ1_00593
Putative peptide ABC transporter periplasmic-binding protein y4tO.
     
 0.786
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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