Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_01042Hypothetical protein. (188 aa)    
Predicted Functional Partners:
exeH
Type II secretion system protein H.
       0.802
outJ
Type II secretion system protein J.
       0.802
outL
Type II secretion system protein L.
       0.802
exeM
Type II secretion system protein M.
       0.802
exeN
Type II secretion system protein N.
       0.802
outK
Type II secretion system protein K.
       0.797
epsG
Type II secretion system protein G.
       0.796
epsC
Type II secretion system protein C.
       0.788
AQ1_01029
tonB-dependent receptor.
       0.784
exeD
Type II secretion system protein D.
       0.782
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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