Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
yiaO2,3-diketo-L-gulonate-binding periplasmic protein YiaO. (353 aa)    
Predicted Functional Partners:
AQ1_01066
Putative TRAP transporter small permease protein.
 
 
 0.994
siaT
Sialic acid TRAP transporter permease protein SiaT.
 
 
 0.982
AQ1_01736
Putative TRAP transporter large permease protein.
 
 
 0.925
AQ1_02192
Putative TRAP transporter large permease protein.
 
 
 0.925
all3028
Monocarboxylate 2-oxoacid-binding periplasmic protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 0.824
AQ1_02193
Tripartite ATP-independent periplasmic transporters, DctQ component.
  
 
 0.800
AQ1_00384
Putative TRAP transporter large permease protein.
 
   
 0.699
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
     0.565
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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