Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yicIAlpha-xylosidase; Belongs to the glycosyl hydrolase 31 family. (722 aa)    
Predicted Functional Partners:
rafA
Alpha-galactosidase.
 
  
 0.913
AQ1_01069
L-fucose isomerase.
 
     0.838
gluA
Lysosomal beta glucosidase.
 
  
 0.836
AQ1_01047
Beta-galactosidase.
 
 
 0.828
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.732
acnA
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
   0.721
amy
Alpha-amylase.
 
  
 0.717
treP
Alpha,alpha-trehalose phosphorylase.
 
  
  0.714
AQ1_02232
Z1 domain protein.
    
  0.708
lacD
Tagatose 1,6-diphosphate aldolase.
  
  
 0.706
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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