Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_01352Hypothetical protein. (214 aa)    
Predicted Functional Partners:
lysS
lysine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.759
dsbB2
Disulfide bond formation protein B 2.
  
     0.744
AQ1_01629
Stringent starvation protein B.
  
   
 0.742
AQ1_01444
UPF0335 protein Plav_2034; Belongs to the UPF0335 family.
  
   
 0.735
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.733
pheT
phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
    0.730
Timm44
Mitochondrial import inner membrane translocase subunit TIM44.
  
     0.720
etfdh
Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial; Accepts electrons from ETF and reduces ubiquinone.
   
    0.709
AQ1_01641
Putative HTH-type transcriptional regulator y4wC.
  
     0.694
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.677
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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