Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_01417Hypothetical protein. (220 aa)    
Predicted Functional Partners:
outJ
Type II secretion system protein J.
  
 0.831
xpsJ
Type II secretion system protein J.
  
 0.820
AQ1_01415
Hypothetical protein.
       0.801
AQ1_01416
Hypothetical protein.
       0.773
epsE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 0.725
xpsE
Type II secretion system protein E.
  
 0.725
xcpR
Type II secretion system protein E.
  
 0.725
outF
Type II secretion system protein F.
  
  
 0.668
xpsF
Type II secretion system protein F.
  
  
 0.668
pilC
Type 4 fimbrial assembly protein PilC.
  
  
 0.668
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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