Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xcpT-2Type II secretion system protein G. (154 aa)    
Predicted Functional Partners:
xcpR
Type II secretion system protein E.
 
 0.944
pilC
Type 4 fimbrial assembly protein PilC.
 
  
 0.929
pefK
Type II secretion system protein K.
 
 
 0.879
outK
Type II secretion system protein K.
 
 
 0.870
outJ
Type II secretion system protein J.
 
 0.861
AQ1_01431
Type II secretion system protein H.
    
  0.853
exeD
Type II secretion system protein D.
 
 
 0.819
epsE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 0.819
xpsJ
Type II secretion system protein J.
 
 0.812
xpsD
Type II secretion system protein D.
 
 
 0.809
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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