Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_01477Hypothetical protein. (128 aa)    
Predicted Functional Partners:
AQ1_02763
Hypothetical protein.
  
     0.724
RT0103
Putative protein-disulfide oxidoreductase.
 
     0.672
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.635
yfhQ
Putative A/G-specific adenine glycosylase YfhQ; Adenine glycosylase active on G-A mispairs.
       0.620
AQ1_01596
Putative acetyltransferase.
  
     0.603
AQ1_02693
CysZ-like protein.
  
     0.585
AQ1_00588
Putative protein.
  
     0.582
AQ1_02694
Hypothetical protein.
  
     0.577
smc
Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.576
AQ1_00775
Putative protein.
  
     0.570
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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