Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_01632Putative assembly protein. (1239 aa)    
Predicted Functional Partners:
tamB
Autotransporter assembly factor TamB.
     
 0.825
AQ1_02324
Dicarboxylate transport.
  
  
 0.755
AQ1_02105
Protein kinase domain protein.
 
    0.612
AQ1_01633
Putative protein.
 
   
 0.597
AQ1_02556
Hypothetical protein.
  
     0.582
AQ1_02104
Hypothetical protein.
  
     0.578
AQ1_01634
Putative chloride channel protein ClcB-like.
       0.530
AQ1_01663
Hypothetical protein.
 
   
 0.505
omp
17 kDa surface antigen.
  
     0.488
AQ1_00964
Phosphate regulon transcriptional regulatory protein PhoB.
  
     0.485
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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