Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PR1Cuticle-degrading protease. (384 aa)    
Predicted Functional Partners:
Cyp4x1
Cytochrome P450 4X1.
  
 0.733
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
     
  0.708
cyp136
Putative cytochrome P450 136.
   
 0.684
yjbH
Putative lipoprotein YjbH.
    
  0.674
AQ1_00458
Putative 55.8 kDa protein in cps region.
    
  0.674
AQ1_02573
Subtilisin BL; Belongs to the peptidase S8 family.
 
  
0.662
ftsK
DNA translocase FtsK.
  
 
 0.646
dinB
DNA polymerase IV.
    
 
 0.642
Surf1
Surfeit locus protein 1.
  
 
   0.636
AQ1_02105
Protein kinase domain protein.
   
 
 0.634
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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