AQ1_01766 protein (alpha proteobacterium Q1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AQ1_01766

EF hand. (186 aa)

Predicted Functional Partners:

metH-2

0.711

AQ1_01767

0.655

SCPL13

0.524

blh-2

0.492

ahcY

0.485

STR1

0.485

cysK

0.442

yncE

0.409

Your Current Organism:

alpha proteobacterium Q1

NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQ1_01766	AQ1_01767	AQ1_01766	AQ1_01767	EF hand.	Putative integral membrane protein.	0.655
AQ1_01766	SCPL13	AQ1_01766	AQ1_01768	EF hand.	Serine carboxypeptidase-like 13.	0.524
AQ1_01766	STR1	AQ1_01766	AQ1_00859	EF hand.	Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial.	0.485
AQ1_01766	ahcY	AQ1_01766	AQ1_00352	EF hand.	Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.485
AQ1_01766	blh-2	AQ1_01766	AQ1_01535	EF hand.	Beta-lactamase hydrolase-like protein.	0.492
AQ1_01766	cysK	AQ1_01766	AQ1_02365	EF hand.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.442
AQ1_01766	metH-2	AQ1_01766	AQ1_02606	EF hand.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.711
AQ1_01766	yncE	AQ1_01766	AQ1_00289	EF hand.	Putative protein.	0.409
AQ1_01767	AQ1_01766	AQ1_01767	AQ1_01766	Putative integral membrane protein.	EF hand.	0.655
AQ1_01767	SCPL13	AQ1_01767	AQ1_01768	Putative integral membrane protein.	Serine carboxypeptidase-like 13.	0.613
SCPL13	AQ1_01766	AQ1_01768	AQ1_01766	Serine carboxypeptidase-like 13.	EF hand.	0.524
SCPL13	AQ1_01767	AQ1_01768	AQ1_01767	Serine carboxypeptidase-like 13.	Putative integral membrane protein.	0.613
STR1	AQ1_01766	AQ1_00859	AQ1_01766	Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial.	EF hand.	0.485
STR1	ahcY	AQ1_00859	AQ1_00352	Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial.	Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.502
STR1	blh-2	AQ1_00859	AQ1_01535	Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial.	Beta-lactamase hydrolase-like protein.	0.497
STR1	cysK	AQ1_00859	AQ1_02365	Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.790
STR1	metH-2	AQ1_00859	AQ1_02606	Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.707
STR1	yncE	AQ1_00859	AQ1_00289	Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial.	Putative protein.	0.495
ahcY	AQ1_01766	AQ1_00352	AQ1_01766	Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	EF hand.	0.485
ahcY	STR1	AQ1_00352	AQ1_00859	Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial.	0.502