Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_01985Hypothetical protein. (213 aa)    
Predicted Functional Partners:
AQ1_01983
L-sorbosone dehydrogenase.
 
     0.569
ligE
Beta-etherase.
       0.501
adhB
Alcohol dehydrogenase cytochrome c subunit.
 
     0.492
AQ1_00311
Acidobacterial duplicated orphan permease.
  
     0.430
AQ1_02041
Acidobacterial duplicated orphan permease.
  
     0.430
nylB
6-aminohexanoate-dimer hydrolase.
  
     0.412
macA-3
Putative macrolide-specific efflux protein MacA.
  
     0.409
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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