Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
alkKmedium-chain-fatty-acid--CoA ligase. (541 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein.
  
 0.879
AQ1_01545
acyl-CoA dehydrogenase, short-chain specific.
 
 
  0.867
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.864
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.860
AQ1_00114
Acyl carrier protein.
  
 0.853
luxQ-2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 0.811
AQ1_02253
Quinone oxidoreductase-like protein 2 homolog.
 
 
  0.810
SPBC1773.06c
Zinc-type alcohol dehydrogenase-like protein.06c.
   
  0.771
ccr
crotonyl-CoA reductase.
   
  0.771
TP53I3
Quinone oxidoreductase PIG3.
   
  0.770
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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