Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fcuAFerrichrome receptor FcuA. (727 aa)    
Predicted Functional Partners:
AQ1_02444
Putative iron-regulated membrane protein.
 
  
 0.946
AQ1_00243
PKHD-type hydroxylase.
 
  
 0.778
AQ1_01857
PKHD-type hydroxylase/MADE_1018490.
  
  
 0.731
AQ1_02445
Hypothetical protein.
       0.727
yncD
Putative TonB-dependent receptor YncD.
 
   
 0.579
fecR-2
Protein FecR.
 
   
 0.576
fecR-3
Protein FecR.
 
  
 0.564
fpvA
Ferripyoverdine receptor.
  
    0.557
fecR
Protein FecR.
 
  
 0.520
viuA-2
Vibriobactin receptor.
  
    0.510
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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